RNA sequencing of identical twins discordant for autism reveals blood-based signatures implicating immune and transcriptional dysregulation.
Ayden Saffari, Matt Arno, Eric Nasser and 6 others
PMID 31719968WHAT IT FOUND
Blood RNA profiles from identical twins discordant for autism showed immune and gene regulation differences, with the immune gene IGHG4 higher in autism.
The small sample and blood-only design mean this is a molecular clue, not a diagnostic or treatment test.
Key findings
01Among discordant identical twin pairs, ASC-affected co-twins showed blood expression differences in three genes at the study's 10% false discovery rate threshold, with IGHG4 higher and EVI2A and SNORD15B lower than their unaffected co-twins.
02In the case-control comparison, four genes passed the 10% false discovery rate threshold: IGHG4, PRR13P5, DEPDC1B and ZNF501.
03The differentially expressed genes were enriched for immune response, regulation of gene expression, and cell signal integration pathways in both the discordant and case-control analyses.
STILL TO COME
How it was doneWhat they foundWhat it means for SLPs
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What it does not show
The sample was very small: only 36 samples were analysed for differential expression, and the authors said it was not powered to detect small methylation differences. Blood gene expression was used as a proxy for brain biology, and the link between blood and brain expression is not fully understood. Samples were collected in adolescence, so it is unknown whether the differences reflect early development or consequences of ASC. The study was discovery-focused and used a false discovery rate threshold of 10%, so findings need replication. All samples were of white ethnic origin, so the signatures may not generalise to other populations. The sample contained only two affected females, so sex-specific effects could not be examined. No full blood cell counts were available, so immune findings could relate to cell composition rather than disease biology. The authors did not perform causal inference, so these signatures cannot show that gene expression changes cause ASC.
Declared interests
The funding statement names the Royal Society and the UK Medical Research Council.
The easy way to misread this
Do not read these blood gene differences as a diagnostic test or a treatment target for autism. The study had a small sample, used blood rather than brain tissue, collected expression in adolescence, and did not test whether the genes cause ASC.